Genetic algorithm optimization of force field parameters: Application to a coarse-grained model of RNA. (English)
Pizzuti, Clara (ed.) et al., Evolutionary computation, machine learning and data mining in bioinformatics. 9th European conference, EvoBIO 2011, Torino, Italy, April 27‒29, 2011. Proceedings. Berlin: Springer (ISBN 978-3-642-20388-6/pbk). Lecture Notes in Computer Science 6623, 147-152 (2011).
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Brownian dynamics simulations on CPU and GPU with BD\_BOX. (English)
J. Comput. Chem. 32, No. 12, 2734-2744 (2011).
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Genetic algorithm optimization of force field parameters: application to a coarse-grained model of RNA (English)
EvoBio, 147-152 (2011).
3
Redmd - reduced molecular dynamics package. (English)
J. Comput. Chem. 30, No. 14, 2364-2373 (2009).
4
Coarse-grained force field for the nucleosome from self-consistent multiscaling. (English)
J. Comput. Chem. 29, No. 9, 1429-1439 (2008).
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The Poisson-Boltzmann model for trna: Assessment of the calculation set-up and ionic concentration cutoff. (English)
J. Comput. Chem. 29, No. 12, 1970-1981 (2008).
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