Berkemer, Sarah J.; Höner zu Siederdissen, Christian; Stadler, Peter F. Compositional properties of alignments. (English) Zbl 07465793 Math. Comput. Sci. 15, No. 4, 609-630 (2021). MSC: 68-XX PDFBibTeX XMLCite \textit{S. J. Berkemer} et al., Math. Comput. Sci. 15, No. 4, 609--630 (2021; Zbl 07465793) Full Text: DOI
Prohaska, Sonja J.; Berkemer, Sarah J.; Gärtner, Fabian; Gatter, Thomas; Retzlaff, Nancy; Höner zu Siederdissen, Christian; Stadler, Peter F. Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem. (English) Zbl 1397.92465 J. Math. Biol. 77, No. 2, 313-341 (2018). MSC: 92D10 92D15 05C45 05C90 62P10 92-08 PDFBibTeX XMLCite \textit{S. J. Prohaska} et al., J. Math. Biol. 77, No. 2, 313--341 (2018; Zbl 1397.92465) Full Text: DOI
Walter Costa, Maria Beatriz; Höner zu Siederdissen, Christian; Tulpan, Dan; Stadler, Peter F.; Nowick, Katja Temporal ordering of substitutions in RNA evolution: uncovering the structural evolution of the Human Accelerated Region 1. (English) Zbl 1394.92100 J. Theor. Biol. 438, 143-150 (2018). MSC: 92D20 92D15 92-08 PDFBibTeX XMLCite \textit{M. B. Walter Costa} et al., J. Theor. Biol. 438, 143--150 (2018; Zbl 1394.92100) Full Text: DOI
Berkemer, Sarah J.; Siederdissen, Christian Höner zu; Stadler, Peter F. Alignments as Compositional Structures. arXiv:1810.07800 Preprint, arXiv:1810.07800 [math.CO] (2018). MSC: 18-XX 92-XX 68-XX BibTeX Cite \textit{S. J. Berkemer} et al., ``Alignments as Compositional Structures'', Preprint, arXiv:1810.07800 [math.CO] (2018) Full Text: arXiv OA License
Berkemer, Sarah J.; Höner zu Siederdissen, Christian; Stadler, Peter F. Algebraic dynamic programming on trees. (English) Zbl 1461.68094 Algorithms (Basel) 10, No. 4, Paper No. 135, 31 p. (2017). MSC: 68Q42 68N18 90C39 PDFBibTeX XMLCite \textit{S. J. Berkemer} et al., Algorithms (Basel) 10, No. 4, Paper No. 135, 31 p. (2017; Zbl 1461.68094) Full Text: DOI
Riechert, Maik; Höner zu Siederdissen, Christian; Stadler, Peter F. Algebraic dynamic programming for multiple context-free grammars. (English) Zbl 1344.68112 Theor. Comput. Sci. 639, 91-109 (2016). MSC: 68Q42 90C39 92D20 PDFBibTeX XMLCite \textit{M. Riechert} et al., Theor. Comput. Sci. 639, 91--109 (2016; Zbl 1344.68112) Full Text: DOI
Höner zu Siederdissen, Christian Sneaking around concatmap, efficient combinators for dynamic programming. (English) Zbl 1291.68122 Proceedings of the 17th ACM SIGPLAN international conference on functional programming, ICFP ’12, Copenhagen, Denmark, September 9–15, 2012. New York, NY: Association for Computing Machinery (ACM) (ISBN 978-1-4503-1054-3). ACM SIGPLAN Notices 47, No. 9, 215-226 (2012). MSC: 68N18 90C39 92D20 PDFBibTeX XMLCite \textit{C. Höner zu Siederdissen}, in: Proceedings of the 17th ACM SIGPLAN international conference on functional programming, ICFP '12, Copenhagen, Denmark, September 9--15, 2012. New York, NY: Association for Computing Machinery (ACM). 215--226 (2012; Zbl 1291.68122) Full Text: DOI