io-port.net

io-port 05892300 Flicek, Paul; Amode, M.Ridwan; Barrell, Daniel; Beal, Kathryn; Brent, Simon; Chen, Yuan; Clapham, Peter; Coates, Guy; Fairley, Susan; Fitzgerald, Stephen; Gordon, Leo; Hendrix, Maurice; Hourlier, Thibaut; Johnson, Nathan; Kähäri, Andreas; Keefe, Damian; Keenan, Stephen; Kinsella, Rhoda; Kokocinski, Felix; Kulesha, Eugene; Larsson, Pontus; Longden, Ian; Mclaren, William M.; Overduin, Bert; Pritchard, Bethan; Riat, Harpreet Singh; Rios, Daniel; Ritchie, Graham R.S.; Ruffier, Magali; Schuster, Michael; Sobral, Daniel; Spudich, Giulietta; Tang, Y.Amy; Trevanion, Stephen; Vandrovcova, Jana; Vilella, Albert J.; White, Simon; Wilder, Steven P.; Zadissa, Amonida; Zamora, Jorge; Aken, Bronwen L.; Birney, Ewan; Cunningham, Fiona; Dunham, Ian; Durbin, Richard; Fernández-Suarez, Xosé M.; Herrero, Javier; Hubbard, Tim J.P.; Parker, Anne; Proctor, Glenn; Vogel, Jan; Searle, Stephen M.J.

Ensembl 2011. (English)

Nucleic Acids Res. 39, No. Database-Issue, 800-806 (2011).

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io-port 05891204 Down, Thomas A.; Piipari, Matias; Hubbard, Tim J.P.

Dalliance: interactive genome viewing on the web. (English)

Bioinformatics 27, No. 6, 889-890 (2011).

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io-port 05891990 Flicek, Paul; Aken, Bronwen L.; Ballester, Benoit; Beal, Kathryn; Bragin, Eugene; Brent, Simon; Chen, Yuan; Clapham, Peter; Coates, Guy; Fairley, Susan; Fitzgerald, Stephen; Fernandez-Banet, Julio; Gordon, Leo; Gräf, Stefan; Haider, Syed; Hammond, Martin; Howe, Kerstin; Jenkinson, Andrew M.; Johnson, Nathan; Kähäri, Andreas; Keefe, Damian; Keenan, Stephen; Kinsella, Rhoda; Kokocinski, Felix; Koscielny, Gautier; Kulesha, Eugene; Lawson, Daniel; Longden, Ian; Massingham, Tim; Mclaren, William M.; Megy, Karine; Overduin, Bert; Pritchard, Bethan; Rios, Daniel; Ruffier, Magali; Schuster, Michael; Slater, Guy; Smedley, Damian; Spudich, Giulietta; Tang, Y.Amy; Trevanion, Stephen; Vilella, Albert J.; Vogel, Jan; White, Simon; Wilder, Steven P.; Zadissa, Amonida; Birney, Ewan; Cunningham, Fiona; Dunham, Ian; Durbin, Richard; Fernández-Suarez, Xosé M.; Herrero, Javier; Hubbard, Tim J.P.; Parker, Anne; Proctor, Glenn; Smith, James; Searle, Stephen M.J.

Ensembl’s 10th year. (English)

Nucleic Acids Res. 38, No. Database-Issue, 557-562 (2010).

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io-port 05766475 Piipari, Matias; Down, Thomas A.; Hubbard, Tim J.P.

Metamotifs - a generative model for building families of nucleotide position weight matrices. (English)

BMC Bioinform. 11, 348 (2010).

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io-port 05744610 Piipari, Matias; Down, Thomas A.; Saini, Harpreet Kaur; Enright, Anton J.; Hubbard, Tim J.P.

Imotifs: an integrated sequence motif visualization and analysis environment. (English)

Bioinformatics 26, No. 6, 843-844 (2010).

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io-port 05746613 Hubbard, Tim J.P.; Aken, B.L.; Ayling, Sarah C.; Ballester, Benoit; Beal, Kathryn; Bragin, E.; Brent, S.; Chen, Yuan; Clapham, P.; Clarke, Laura; Coates, G.; Fairley, S.; Fitzgerald, S.; Fernandez-Banet, J.; Gordon, L.; Gräf, Stefan; Haider, Syed; Hammond, Martin; Holland, Richard C.G.; Howe, Kevin L.; Jenkinson, Andrew M.; Johnson, N.; Kähäri, Andreas; Keefe, Damian; Keenan, S.; Kinsella, R.; Kokocinski, Felix; Kulesha, Eugene; Lawson, Daniel; Longden, I.; Megy, Karine; Meidl, Patrick; Overduin, B.; Parker, A.; Pritchard, B.; Rios, D.; Schuster, M.; Slater, Guy; Smedley, Damian; Spooner, William; Spudich, G.; Trevanion, S.; Vilella, Albert J.; Vogel, J.; White, S.; Wilder, S.; Zadissa, Arek; Birney, Ewan; Cunningham, Fiona; Curwen, Val; Durbin, Richard; Fernandez-Suarez, X.M.; Herrero, Javier; Kasprzyk, Arek; Proctor, Glenn; Smith, James; Searle, Stephen M.J.; Flicek, Paul

Ensembl 2009. (English)

Nucleic Acids Res. 37, No. Database-Issue, 690-697 (2009).

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io-port 05746495 Cochrane, Guy; Akhtar, Ruth; Bonfield, James K.; Bower, Lawrence; Demiralp, Fehmi; Faruque, Nadeem; Gibson, Richard; Hoad, Gemma; Hubbard, Tim J.P.; Hunter, Christopher; Jang, Mikyung; Juhos, Szilveszter; Leinonen, Rasko; Leonard, Steven; Lin, Quan; Lopez, Rodrigo; Lorenc, Dariusz; Mcwilliam, Hamish; Mukherjee, Gaurab; Plaister, Sheila; Radhakrishnan, Rajesh; Robinson, Stephen; Sobhany, Siamak; Hoopen, Petra Ten; Vaughan, Robert; Zalunin, Vadim; Birney, Ewan

Petabyte-scale innovations at the European nucleotide archive. (English)

Nucleic Acids Res. 37, No. Database-Issue, 19-25 (2009).

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io-port 05743628 Reeves, Gabrielle A.; Eilbeck, Karen; Magrane, Michele; O’donovan, Claire; Montecchi-Palazzi, Luisa; Harris, Midori A.; Orchard, Sandra E.; Jimenez, Rafael C.; Prlic, Andreas; Hubbard, Tim J.P.; Hermjakob, Henning; Thornton, Janet M.

The protein feature ontology: a tool for the unification of protein feature annotations. (English)

Bioinformatics 24, No. 23, 2767-2772 (2008).

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io-port 05438472 Andreeva, Antonina; Howorth, Dave; Chandonia, John-Marc; Brenner, Steven E.; Hubbard, Tim J.P.; Chothia, Cyrus; Murzin, Alexey G.

Data growth and its impact on the SCOP database: New developments. (English)

Nucleic Acids Res. 36, Database-Issue, 419-425 (2008).

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io-port 05438442 Wilming, L.G.; Gilbert, J.G.R.; Howe, K.; Trevanion, S.; Hubbard, Tim J.P.; Harrow, J.L.

The vertebrate genome annotation (Vega) database. (English)

Nucleic Acids Res. 36, Database-Issue, 753-760 (2008).

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io-port 05438421 Cochrane, Guy; Akhtar, Ruth; Aldebert, Philippe; Althorpe, Nicola; Baldwin, Alastair; Bates, Kirsty; Bhattacharyya, Sumit; Bonfield, James K.; Bower, Lawrence; Browne, Paul; Castro, Matias; Cox, Tony; Demiralp, Fehmi; Eberhardt, Ruth; Faruque, Nadeem; Hoad, Gemma; Jang, Mikyung; Kulikova, Tamara; Labarga, Alberto; Leinonen, Rasko; Leonard, Steven; Lin, Quan; Lopez, Rodrigo; Lorenc, Dariusz; Mcwilliam, Hamish; Mukherjee, Gaurab; Nardone, Francesco; Plaister, Sheila; Robinson, Stephen; Sobhany, Siamak; Vaughan, Robert; Wu, Dan; Zhu, Weimin; Apweiler, Rolf; Hubbard, Tim J.P.; Birney, Ewan

Priorities for nucleotide trace, sequence and annotation data capture at the ensembl trace archive and the EMBL nucleotide sequence database. (English)

Nucleic Acids Res. 36, Database-Issue, 5-12 (2008).

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io-port 05438417 Flicek, Paul; Aken, B.L.; Beal, K.; Ballester, B.; Cáccamo, Mario; Chen, Yuan; Clarke, Laura; Coates, G.; Cunningham, Fiona; Cutts, Tim; Down, Thomas A.; Dyer, S.C.; Eyre, T.; Fitzgerald, S.; Fernandez-Banet, J.; Gräf, Stefan; Haider, S.; Hammond, Martin; Holland, R.; Howe, Kevin L.; Howe, K.; Johnson, N.; Jenkinson, A.; Kähäri, Andreas; Keefe, Damian; Kokocinski, Felix; Kulesha, Eugene; Lawson, Daniel; Longden, I.; Megy, Karine; Meidl, Patrick; Overduin, B.; Parker, A.; Pritchard, B.; Prlic, Andreas; Rice, S.; Rios, D.; Schuster, M.; Sealy, I.; Slater, Guy; Smedley, Damian; Spudich, G.; Trevanion, S.; Vilella, Albert J.; Vogel, J.; White, S.; Wood, M.; Birney, Ewan; Cox, Tony; Curwen, Val; Durbin, Richard; Fernandez-Suarez, X.M.; Herrero, J.; Hubbard, Tim J.P.; Kasprzyk, Arek; Proctor, Glenn; Smith, James; Ureta-Vidal, Abel; Searle, Stephen M.J.

Ensembl 2008. (English)

Nucleic Acids Res. 36, Database-Issue, 707-714 (2008).

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io-port 05326429 Dogruel, Mutlu; Down, Thomas A.; Hubbard, Tim J.P.

Nestedmica as an ab initio protein motif discovery tool. (English)

BMC Bioinform. 9, No. 1, 19 (2008).

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io-port 05295179 Hubbard, Thomas; Lencevicius, Raimondas; Metz, Edu; Raghavan, Gopal

Performance validation on multicore mobile devices. (English)

Meyer, Bertrand (ed.) et al., Verified software: Theories, tools, experiments. First IFIP TC 2/WG 2.3 conference, VSTTE 2005, Zurich, Switzerland, October 10‒13, 2005. Revised selected papers and discussions. Berlin: Springer (ISBN 978-3-540-69147-1/pbk). Lecture Notes in Computer Science 4171, 413-421 (2008).

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io-port 05438151 Hubbard, Tim J.P.; Aken, B.L.; Beal, K.; Ballester, B.; Cáccamo, Mario; Chen, Yuan; Clarke, Laura; Coates, G.; Cunningham, Fiona; Cutts, Tim; Down, Thomas; Dyer, S.C.; Fitzgerald, S.; Fernandez-Banet, J.; Gräf, Stefan; Haider, S.; Hammond, Martin; Herrero, J.; Holland, R.; Howe, Kevin L.; Howe, K.; Johnson, N.; Kähäri, Andreas; Keefe, Damian; Kokocinski, Felix; Kulesha, Eugene; Lawson, Daniel; Longden, I.; Melsopp, Craig; Megy, Karine; Meidl, Patrick; Ouverdin, B.; Parker, A.; Prlic, Andreas; Rice, S.; Rios, D.; Schuster, M.; Sealy, I.; Severin, J.; Slater, Guy; Smedley, Damian; Spudich, G.; Trevanion, S.; Vilella, Albert J.; Vogel, J.; White, S.; Wood, M.; Cox, Tony; Curwen, Val; Durbin, Richard; Fernandez-Suarez, X.M.; Flicek, Paul; Kasprzyk, Arek; Proctor, Glenn; Searle, Stephen M.J.; Smith, James; Ureta-Vidal, Abel; Birney, Ewan

Ensembl 2007. (English)

Nucleic Acids Res. 35, Database-Issue, 610-617 (2007).

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io-port 05438140 Andreeva, Antonina; Prlic, Andreas; Hubbard, Tim J.P.; Murzin, Alexey G.

SISYPHUS - structural alignments for proteins with non-trivial relationships. (English)

Nucleic Acids Res. 35, Database-Issue, 253-259 (2007).

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io-port 05326262 Prlić, Andreas; Down, Thomas A.; Kulesha, Eugene; Finn, Robert D.; Kähäri, Andreas; Hubbard, Tim Jp

Integrating sequence and structural biology with DAS. (English)

BMC Bioinform. 8, No. 1, 333 (2007).

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io-port 70241366 Ii, Paul Logasa Bogen; Francisco-Revilla, Luis; Furuta, Richard; Hubbard, Takeisha; Karadkar, Unmil; Iii, Frank M. Shipman

Longitudinal study of changes in blogs (English)

JCDL, 135-136 (2007).

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io-port 70431907 Kieliszewski, Cheryl A.; Cui, Jie; Behal, Amit; Lelescu, Ana; Hubbard, Takeisha

A visualization solution for the analysis and identification of workforce expertise (English)

HCI (8), 317-326 (2007).

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io-port 05438004 Birney, Ewan; Andrews, T.Daniel; Cáccamo, Mario; Chen, Yuan; Clarke, Laura; Coates, G.; Cox, Tony; Cunningham, Fiona; Curwen, Val; Cutts, Tim; Down, Thomas; Durbin, Richard; Fernandez-Suarez, X.M.; Flicek, Paul; Gräf, Stefan; Hammond, Martin; Herrero, J.; Howe, Kevin L.; Iyer, V.; Jekosch, K.; Kähäri, Andreas; Kasprzyk, Arek; Keefe, Damian; Kokocinski, Felix; Kulesha, Eugene; London, D.; Longden, I.; Melsopp, Craig; Meidl, Patrick; Overduin, B.; Parker, A.; Proctor, Glenn; Prlic, Andreas; Rae, Mark; Rios, D.; Redmond, Seth; Schuster, M.; Sealy, I.; Searle, Stephen M.J.; Severin, J.; Slater, Guy; Smedley, Damian; Smith, James; Stabenau, Arne; Stalker, Jim; Trevanion, S.; Ureta-Vidal, Abel; Vogel, J.; White, S.; Woodwark, Cara; Hubbard, Tim J.P.

Ensembl 2006. (English)

Nucleic Acids Res. 34, Database-Issue, 556-561 (2006).

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