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io-port 05883231
Backofen, Rolf
;
Tsur, Dekel
;
Zakov, Shay
;
Ziv-Ukelson, Michal
Sparse RNA folding: time and space efficient algorithms.
(English)
J. Discrete Algorithms 9, No. 1, 12-31 (2011).
Summary: The currently fastest algorithm for RNA single strand folding requires $O(nZ)$ time and $Θ(n^{2})$ space, where $n$ denotes the length of the input string and $Z$ is a sparsity parameter satisfying $n \leqslant Z
Keywords:
RNA folding
;
time complexity
;
space complexity
;
dynamic programming
;
sparsification
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