The EDML format to exchange energy profiles of protein molecular structures. (English)
Huang, De-Shuang (ed.) et al., Emerging intelligent computing technology and applications. 5th international conference on intelligent computing, ICIC 2009, Ulsan, South Korea, September 16‒19, 2009. Proceedings. Berlin: Springer (ISBN 978-3-642-04069-6/pbk). Lecture Notes in Computer Science 5754, 146-157 (2009).
Summary: The Energy Distribution Markup Language (EDML) is an XML-based format that we have designed and developed to exchange protein structure energy profiles between many computers and users. Energy profiles that are distributions of various potential energies over consecutive atoms in protein molecular structures can be downloaded from the Energy Distribution Data Bank (EDB, \url{http://edb.aei.polsl.pl}) in the EDML format. In the paper, we describe the purpose of the EDML, a possible use of energy profiles, and internal structure of documents created in the EDML format.
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