Result 1 to 20 of 1303 total
On the page number of RNA secondary structures with pseudoknots. (English)
J. Math. Biol. 65, No. 6-7, 1337-1357 (2012).
1
RNA folding algorithms with G-quadruplexes. (English)
de Souto, Marcilio C. (ed.) et al., Advances in bioinformatics and computational biology. 7th Brazilian symposium on bioinformatics, BSB 2012, Campo Grande, Brazil, August 15‒17, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-31926-6/pbk). Lecture Notes in Computer Science 7409. Lecture Notes in Bioinformatics, 49-60 (2012).
2
A randomized numerical aligner (rNA). (English)
J. Comput. Syst. Sci. 78, No. 6, 1868-1882 (2012).
3
Speedup of RNA pseudoknotted secondary structure recurrence computation with the four-Russians method. (English)
Lin, Guohui (ed.), Combinatorial optimization and applications. 6th international conference, COCOA 2012, Banff, AB, Canada, August 5‒9, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-31769-9/pbk). Lecture Notes in Computer Science 7402, 176-187 (2012).
4
Expected distance between terminal nucleotides of RNA secondary structures. (English)
J. Math. Biol. 65, No. 3, 581-599 (2012).
5
Space efficient modifications to structator‒ a fast index-based search tool for RNA sequence-structure patterns. (English)
Klasing, Ralf (ed.), Experimental algorithms. 11th international symposium, SEA 2012, Bordeaux, France, June 7‒9, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-30849-9/pbk). Lecture Notes in Computer Science 7276, 27-38 (2012).
6
Exact pattern matching for RNA structure ensembles. (English)
Chor, Benny (ed.), Research in computational molecular biology. 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21‒24, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-29626-0/pbk). Lecture Notes in Computer Science 7262. Lecture Notes in Bioinformatics, 245-260 (2012).
7
Detecting SNP-induced structural changes in RNA: application to disease studies. (English)
Chor, Benny (ed.), Research in computational molecular biology. 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21‒24, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-29626-0/pbk). Lecture Notes in Computer Science 7262. Lecture Notes in Bioinformatics, 241-243 (2012).
8
Evidence for widespread association of mammalian splicing and conserved long-range RNA structures. (English)
Chor, Benny (ed.), Research in computational molecular biology. 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21‒24, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-29626-0/pbk). Lecture Notes in Computer Science 7262. Lecture Notes in Bioinformatics, 199 (2012).
9
TrueSight: self-training algorithm for splice junction detection using RNA-seq. (English)
Chor, Benny (ed.), Research in computational molecular biology. 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21‒24, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-29626-0/pbk). Lecture Notes in Computer Science 7262. Lecture Notes in Bioinformatics, 163-164 (2012).
10
A robust method for transcript quantification with RNA-seq data. (English)
Chor, Benny (ed.), Research in computational molecular biology. 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21‒24, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-29626-0/pbk). Lecture Notes in Computer Science 7262. Lecture Notes in Bioinformatics, 127-147 (2012).
11
Impact of the energy model on the complexity of RNA folding with pseudoknots. (English)
Kärkkäinen, Juha (ed.) et al., Combinatorial pattern matching. 23rd annual symposium, CPM 2012, Helsinki, Finland, July 3‒5, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-31264-9/pbk). Lecture Notes in Computer Science 7354, 321-333 (2012).
12
Local exact pattern matching for non-fixed RNA structures. (English)
Kärkkäinen, Juha (ed.) et al., Combinatorial pattern matching. 23rd annual symposium, CPM 2012, Helsinki, Finland, July 3‒5, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-31264-9/pbk). Lecture Notes in Computer Science 7354, 306-320 (2012).
13
Symmetric circular matchings and RNA folding. (English)
Discrete Math. 312, No. 1, 100-112 (2012).
14
A memory efficient method for structure-based RNA multiple alignment (English)
IEEE/ACM Trans. Comput. Biology Bioinform. 9, No. 1, 1-11 (2012).
15
Energy landscape analysis for regulatory RNA finding using scalable distributed cyberinfrastructure. (English)
Concurrency Comput. Pract. Exp. 23, No. 17, 2292-2304 (2011).
16
Approximation of RNA multiple structural alignment. (English)
J. Discrete Algorithms 9, No. 4, 365-376 (2011).
17
Finding common RNA pseudoknot structures in polynomial time. (English)
J. Discrete Algorithms 9, No. 4, 335-343 (2011).
18
Particle swarm optimization for finding RNA secondary structures. (English)
Int. J. Intell. Comput. Cybern. 4, No. 2, 160-186 (2011).
19
Combinatorial analysis of interacting RNA molecules. (English)
Math. Biosci. 233, No. 1, 47-58 (2011).
20
Result 1 to 20 of 1303 total
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