@inbook {IOPORT.05941160,
    author       = {Peng, Liu and Tan, Guangming and Kalia, Rajiv K. and Nakano, Aiichiro and Vashishta, Priya and Fan, Dongrui and Sun, Ninghui},
    title        = {Preliminary investigation of accelerating molecular dynamics simulation on Godson-T many-core processor.},
    year         = {2011},
    booktitle    = {Euro-Par 2010 parallel processing workshops. HeteroPar, HPCC, HiBB, CoreGrid, UCHPC, HPCF, PROPER, CCPI, VHPC. Ischia, Italy, August 31 -- September 3, 2010. Revised selected papers},
    isbn         = {978-3-642-21877-4},
    pages        = {349-356},
    publisher    = {Berlin: Springer},
    doi          = {10.1007/978-3-642-21878-1_43},
    abstract     = {Summary: Molecular dynamics (MD) simulation is widely used in computational science, however, its irregular memory-access pattern imposes great difficulty on performance optimization. This paper presents a joint application/architecture study to accelerate MD on an emerging unconventional computing platform-Godson-T many-core architecture. We propose three incremental optimizations: (1) a divide-and-conquer algorithm adaptive to on-chip memory; (2) a novel data-layout to re-organize linked-list cell data structures to improve data locality; (3) an on-chip locality-aware parallel algorithm to enhance data reuse. Experiments on an event-driven, cycle-accurate Godson-T simulator achieve excellent speedup of 62 on 64 cores.},
    identifier   = {05941160},
}